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    21 repositories

    • rjava-interface

      Public
      Built on top of the JRI library. This library includes command queueing logic for thread-safety. Used by J/qtl and J/maanova.
      Java
      •
      GNU General Public License v3.0
      •2•1•0•0•Updated Apr 29, 2015Apr 29, 2015

    • build-common

      Public
      Some shared ant/ivy/jar files used for my other projects
      1•1•0•0•Updated Apr 29, 2015Apr 29, 2015

    • QTLViewer

      Public
      Processing
      •0•3•0•0•Updated May 23, 2013May 23, 2013

    • gwt-client-util

      Public
      Some utility classes for browser-side GWT
      Java
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated May 9, 2013May 9, 2013

    • phylotosdp

      Public
      Python
      •0•1•0•0•Updated Apr 27, 2012Apr 27, 2012

    • bioinf-data

      Public
      java code for reading/writing/manipulating bioinformatics data
      Java
      •0•1•0•0•Updated Jul 11, 2011Jul 11, 2011

    • j-maanova

      Public
      A Java swing front-end to the R/maanova package.
      Java
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Jun 7, 2011Jun 7, 2011

    • java-util

      Public
      Java utilities created for projects in the Churchill Group
      Java
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 1, 2011Jun 1, 2011

    • drake-genetics

      Public
      An educational web application for exploring genetics using the fictional drake genome.
      Java
      •
      GNU General Public License v3.0
      •0•1•4•0•Updated May 5, 2011May 5, 2011

    • Cheat_Sheets

      Public
      Cheat sheets and tips for various languages and software.
      0•1•0•0•Updated Mar 15, 2011Mar 15, 2011

    • bham

      Public
      A swing based java application for association mapping (experimental)
      Java
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Mar 1, 2011Mar 1, 2011

    • haplotype-analysis

      Public
      Java code for analysis of haplotype data (experimental)
      Java
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Mar 1, 2011Mar 1, 2011

    • haplotype-inference

      Public
      Java code to infer haplotype structure (experimental)
      Java
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Feb 23, 2011Feb 23, 2011

    • emma-scripts

      Public
      R scripts to simplify using the EMMA package with CSV genotypes and MPD phenotypes
      R
      •0•1•0•0•Updated Dec 30, 2010Dec 30, 2010

    • pub-array

      Public
      A swing based java application for building web applications from analized microarray data
      Java
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Oct 20, 2010Oct 20, 2010

    • genetic-util

      Public
      Some utility data structures and utility function for handling SNPs and haplotypes in Java (experimental)
      Java
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Oct 20, 2010Oct 20, 2010

    • managed-jvm-launcher

      Public
      Java source for launching a new JVM. Used by J/maanova and J/qtl to work around some WebStart limitations
      Java
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Oct 18, 2010Oct 18, 2010

    • data-plots

      Public
      Some of the 2D data plots code used in J/maanova and J/qtl
      Java
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Oct 18, 2010Oct 18, 2010

    • hmmSNP

      Public
      HMM software for imputing missing genotypes in SNP datasets
      C
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Aug 16, 2010Aug 16, 2010

    • rjava-conf-schema

      Public
      XSD schema module for applications combining R and Java
      GNU General Public License v3.0
      •0•1•0•0•Updated Jul 29, 2010Jul 29, 2010

    • maanova

      Public
      A clone of the bioconductor R/maanova repository
      R
      •1•2•0•0•Updated Jun 11, 2010Jun 11, 2010
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