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    • rbiom

      Public
      An R Package for Integrated Analysis and Visualization of Microbiome Data
      R
      Other
      21830Updated Apr 23, 2026Apr 23, 2026
    • EsViritu

      Public
      Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data
      Python
      MIT License
      75150Updated Apr 21, 2026Apr 21, 2026
    • h5lite

      Public
      Read/write HDF5 datasets and attributes from R
      R
      Other
      0200Updated Apr 15, 2026Apr 15, 2026
    • hdf5lib

      Public
      HDF5 C Library for R
      C
      Other
      0010Updated Apr 14, 2026Apr 14, 2026
    • ecodive

      Public
      Parallel and Memory-Efficient R Package for Ecological Diversity Analysis
      R
      Other
      0600Updated Apr 14, 2026Apr 14, 2026
    • CMMR Developer News
      HTML
      0000Updated Mar 7, 2026Mar 7, 2026
    • Patterned Fills for R's ggplot2 and grid Graphics
      R
      Other
      01200Updated Feb 13, 2026Feb 13, 2026
    • Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes
      Python
      MIT License
      12340Updated Nov 24, 2025Nov 24, 2025
    • Mutexes, Semaphores, and Message Queues for R
      R
      Other
      01100Updated Aug 7, 2025Aug 7, 2025
    • jobqueue

      Public
      Queue and Run Asynchronous Interruptible R Tasks on Background Processes
      R
      Other
      0200Updated Aug 7, 2025Aug 7, 2025
    • webqueue

      Public
      HTTP Server Using Multiple CPU Cores
      R
      Other
      0210Updated May 24, 2025May 24, 2025
    • semaphore

      Public
      Shared Memory Atomic Operations in R
      R
      Other
      0200Updated May 23, 2025May 23, 2025
    • HTML
      0710Updated Mar 7, 2024Mar 7, 2024
    • virmap

      Public
      Perl
      GNU Affero General Public License v3.0
      1425170Updated Feb 2, 2021Feb 2, 2021
    • covid

      Public archive
      COVID-19 Dashboard coded in Shiny R
      R
      GNU Affero General Public License v3.0
      1000Updated Jun 26, 2020Jun 26, 2020
    • puma-deprecated

      Public archive
      Code for the unreleased/unpublished PUMA pipeline.
      Perl
      GNU General Public License v3.0
      0000Updated Jan 7, 2020Jan 7, 2020
    • NashMicrobiome2017

      Public archive
      Pipeline for Fungal Community Analysis
      Perl
      GNU General Public License v3.0
      0000Updated Jul 19, 2017Jul 19, 2017
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