Repositories list

• coxdocs

  Public
  HTML

  •44 forks•44 stars•00 issues•00 pull requests•Updated Oct 14, 2025Oct 14, 2025

• converters

  Public
  Python

  •

  Other

  •00 forks•11 star•00 issues•00 pull requests•Updated Sep 25, 2025Sep 25, 2025

• CCS

  Public
  Jupyter Notebook

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jun 17, 2025Jun 17, 2025

• CoxLab_Bug_Reporting

  Public template
  MaxQuant and Perseus Bug Reporting

  bioinformaticsbugproteomics+ 4

  bioinformaticsbugproteomicsproteomics-databioinformatics-analysisbugreportsproteomics-data-analysis

  00 forks•1010 stars•6262 issues•00 pull requests•Updated Mar 19, 2025Mar 19, 2025

• PerseusR

  Public
  R package for easy interop between Perseus and R

  bioinformaticsrinterop+ 3

  bioinformaticsrinteropperseusproteomicsmaxquant

  R

  •

  Other

  •55 forks•1717 stars•77 issues•00 pull requests•Updated Sep 9, 2022Sep 9, 2022

• MaxLynxPaperAnalysis

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 11, 2022Jan 11, 2022

• VariationSearchProtocol

  Public
  Python scripts for the manuscript

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 17, 2021Jun 17, 2021

• tools

  Public
  R

  •11 fork•00 stars•00 issues•11 pull request•Updated May 18, 2021May 18, 2021

• DIAtools

  Public
  Python

  •55 forks•66 stars•22 issues•00 pull requests•Updated Mar 25, 2021Mar 25, 2021

• perseuspy

  Public
  Integration between Perseus and Python

  pythonbioinformaticsperseus+ 1

  pythonbioinformaticsperseusmaxquant

  Python

  •

  MIT License

  •66 forks•99 stars•00 issues•00 pull requests•Updated Dec 29, 2020Dec 29, 2020

• PluginInterop

  Public
  Enables working with external scripts and tools from within Perseus

  pythonbioinformaticsr+ 4

  pythonbioinformaticsrinteropperseusproteomicsmaxquant

  C#

  •55 forks•55 stars•11 issue•00 pull requests•Updated Nov 5, 2020Nov 5, 2020

• wiNNer

  Public
  Sliding-window-based regression model for prediction of fragment intensities using Python and Keras

  Python

  •00 forks•22 stars•11 issue•00 pull requests•Updated Sep 19, 2019Sep 19, 2019

• PluginUpperCase

  Public
  Simple Perseus plugin to make string column upper case

  C#

  •11 fork•00 stars•00 issues•00 pull requests•Updated Apr 11, 2019Apr 11, 2019

• PluginDependentPeptides

  Public
  Dependent peptide search result import for Perseus

  C#

  •11 fork•22 stars•11 issue•00 pull requests•Updated Apr 11, 2019Apr 11, 2019

• PluginTutorial

  Public
  Tutorial for Perseus plugin development

  C#

  •22 forks•22 stars•11 issue•00 pull requests•Updated Jul 11, 2018Jul 11, 2018