Repositories list

• sc-lnc-denv

  Public
  Analise de datasets públicos de single-cell de individuos naturalmente infectados por DENV(1-4) para inferir função de lncRNA

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 20, 2026Apr 20, 2026

• vigeas

  Public
  VIral GEnome ASsembly pipelines for WGS

  nanoporeilluminawhole-genome-sequencing+ 1

  nanoporeilluminawhole-genome-sequencingviral-genomics

  R

  •

  MIT License

  •00 forks•55 stars•00 issues•00 pull requests•Updated Apr 17, 2026Apr 17, 2026

• GEDEX

  Public
  Utility to retrieval metadata from GISAID EPI_SET URL

  phylogeneticsgisaid

  phylogeneticsgisaid

  JavaScript

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 16, 2026Apr 16, 2026

• sara

  Public
  semi automatic RNA-Seq analysis

  Shell

  •00 forks•22 stars•00 issues•00 pull requests•Updated Mar 16, 2026Mar 16, 2026

• chikmsptt

  Public
  CHIKV Mutation Spotter

  HTML

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 11, 2026Mar 11, 2026

• labstuffs

  Public
  This repository contains scripts and files to run the bioinformatic analysis of khourious reaseach lab

  macoslinuxwsl2

  macoslinuxwsl2

  R

  •00 forks•44 stars•00 issues•00 pull requests•Updated Mar 10, 2026Mar 10, 2026

• R_figures

  Public
  Code storage for creating graphics in R language

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 24, 2026Feb 24, 2026

• beastime

  Public
  BEAST MCMC Run-Time Estimator

  beastphylogeneticsmcmc+ 1

  beastphylogeneticsmcmcbayesian-analysis

  HTML

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 19, 2026Jan 19, 2026

• Origin-and-Dispersal-of-Subtype-F1-HIV-1-in-Bahia-Northeast-Brazil

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Nov 8, 2024Nov 8, 2024

• Early-ZIKV-genomes-NE-BR-to-the-Americas

  Public
  Analyses of Early ZIKV Genomes Are Consistent with Viral Spread from Northeast Brazil to the Americas

  00 forks•00 stars•00 issues•00 pull requests•Updated Nov 6, 2024Nov 6, 2024

• rnapenr

  Public archive
  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 6, 2023Dec 6, 2023

• IGM-TRAIN

  Public
  Bioinformática Decodificada: A Jornada do Iniciante à Genômica de Patógenos

  Jupyter Notebook

  •

  Creative Commons Zero v1.0 Universal

  •00 forks•77 stars•00 issues•00 pull requests•Updated Dec 1, 2023Dec 1, 2023

• IGM_SARSCOV2

  Public archive
  dezordi/ViralFlow workflow for SARS-CoV-2 reference guided genome assembly modified by FIOCRUZ-IGM to work locally

  Python

  •1818 forks•00 stars•00 issues•00 pull requests•Updated Oct 22, 2022Oct 22, 2022

• vgapONT

  Public archive
  Viral genome assembly pipeline for WGS using ONT

  bioinformaticspipelinegenomics+ 7

  bioinformaticspipelinegenomicsminionwhole-genome-sequencingviral-genomicszikachikungunyananopore-sequencingsars-cov-2

  Shell

  •00 forks•22 stars•00 issues•00 pull requests•Updated Oct 22, 2022Oct 22, 2022

• minion-seq

  Public archive
  Python

  •33 forks•00 stars•00 issues•00 pull requests•Updated Oct 22, 2022Oct 22, 2022