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7 repositories

GenVarLoader
Public
Dataloader for applying sequence models to personalized genomics
Python
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MIT License
•4•29•5•2•Updated Apr 22, 2026Apr 22, 2026
WASP2
Public
WASP2: High-performance allele-specific analysis pipeline for next-generation sequencing data
python rust bioinformatics
python rust bioinformatics genomics ngs allele-specific pyo3
Python
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Other
•0•9•1•0•Updated Apr 19, 2026Apr 19, 2026
genvarloader-cli
Public
Command line interface for GenVarLoader
Python
•0•0•0•0•Updated Mar 6, 2026Mar 6, 2026
runaAI
Public
Dockerfile
•0•0•0•0•Updated Jan 31, 2026Jan 31, 2026
varCA
Public
Use an ensemble of variant callers to call variants from ATAC-seq data
machine-learning snakemake random-forest
machine-learning snakemake random-forest variant-calling atac-seq-data
Python
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MIT License
•6•23•19•1•Updated May 14, 2025May 14, 2025
sn_cocaine_rats
Public
Python
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MIT License
•0•2•0•0•Updated Jan 24, 2025Jan 24, 2025
GLiMMIRS
Public
GLiMMIRS: Generalized Linear Models for Measuring Interactions between Regulatory Sequences
Jupyter Notebook
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MIT License
•1•6•0•1•Updated Aug 29, 2024Aug 29, 2024

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