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    • Jupyter Notebook
      0000Updated Apr 6, 2026Apr 6, 2026
    • Analysis scripts for the network analyses of the Flywire connectome. Publication: "Network Statistics of the Whole-Brain Connectome of Drosophila"
      Jupyter Notebook
      MIT License
      1800Updated Feb 14, 2026Feb 14, 2026
    • MATLAB
      MIT License
      0100Updated Feb 10, 2026Feb 10, 2026
    • CNN-based fast Drosophila song segmenter for closed-loop applications.
      Python
      BSD 3-Clause "New" or "Revised" License
      2000Updated Jan 29, 2026Jan 29, 2026
    • codex

      Public
      Explore the FlyWire Connectome
      Python
      Apache License 2.0
      177140Updated Jun 3, 2025Jun 3, 2025
    • Annotations of visual neuron types in the FlyWire Connectome
      Python
      Apache License 2.0
      0300Updated Mar 30, 2025Mar 30, 2025
    • Model weights, example stimuli, and code for the paper "One-to-one mapping between deep network units and real neurons uncovers a visual population code for soc…
      Jupyter Notebook
      GNU General Public License v3.0
      2500Updated Jan 10, 2025Jan 10, 2025
    • fly-vr

      Public
      FlyVR is code for design and control of multisensory virtual reality experiments for flies.
      Python
      67120Updated Nov 6, 2024Nov 6, 2024
    • leap_rigs

      Public
      Code for running experiments on the LEAP rigs.
      Python
      0100Updated Nov 8, 2021Nov 8, 2021
    • fictrac

      Public
      FicTrac: A webcam-based method for tracking spherical motion and generating fictive animal paths.
      C++
      Other
      37000Updated Jun 28, 2021Jun 28, 2021
    • Python API to control Motif recording systems
      Python
      2000Updated Apr 16, 2021Apr 16, 2021
    • FlyCaImAn

      Public
      Calcium Imaging Processing Pipeline of 3D time series
      MATLAB
      2100Updated Mar 2, 2021Mar 2, 2021
    • Jupyter notebooks for running SLEAP on Google Colaboratory
      Jupyter Notebook
      1110Updated Jan 4, 2021Jan 4, 2021
    • Meshdown

      Public
      Download 3D meshes from FlyWire via Docker
      Dockerfile
      0000Updated Aug 13, 2020Aug 13, 2020
    • code and data for Stern et al. (2017)
      MATLAB
      3000Updated Aug 4, 2020Aug 4, 2020
    • Murthy lab version of FlySongSegmenter (FSS) - see Coen et al. Nature 2014 and Clemens et al. Curr Biol 2018
      MATLAB
      2210Updated Jul 29, 2020Jul 29, 2020
    • GLMHMM

      Public
      MATLAB
      62410Updated Jan 15, 2020Jan 15, 2020
    • pybmt

      Public
      Python Ball Motion Tracking (pymbt): A python interface for FicTrac (https://github.com/rjdmoore/fictrac)
      Python
      Other
      4420Updated Dec 6, 2019Dec 6, 2019
    • FLyTRAP

      Public
      Code for analyzing playback experiments in Deutsch et al. (2019).
      MATLAB
      0000Updated Aug 15, 2019Aug 15, 2019
    • New version of fly tracker that uses keras/deep networks to track flies
      Python
      0300Updated Aug 8, 2019Aug 8, 2019
    • analysis pipeline for classifying song pulses in Drosophila
      HTML
      1000Updated Dec 7, 2018Dec 7, 2018
    • leap

      Public
      LEAP Estimates Animal Pose
      MATLAB
      Apache License 2.0
      47500Updated Jul 25, 2018Jul 25, 2018
    • pulses in, Pfast & Pslow out
      MATLAB
      2000Updated Aug 27, 2017Aug 27, 2017
    • code for fitting the GLM filters in LaRue et al. (2015)
      MATLAB
      0100Updated Jul 27, 2015Jul 27, 2015
    • Code for analyzing the courtship duets of Drosophila virilis from audio recordings
      MATLAB
      MIT License
      1000Updated Jun 3, 2015Jun 3, 2015
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