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    25 repositories

    • lightbead-analysis

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Apr 6, 2026Apr 6, 2026

    • flywire-network-analysis

      Public
      Analysis scripts for the network analyses of the Flywire connectome. Publication: "Network Statistics of the Whole-Brain Connectome of Drosophila"
      Jupyter Notebook
      •
      MIT License
      •1•8•0•0•Updated Feb 14, 2026Feb 14, 2026

    • waggle-detector

      Public
      MATLAB
      •
      MIT License
      •0•1•0•0•Updated Feb 10, 2026Feb 10, 2026

    • closed_loop_song_segmenter

      Public
      CNN-based fast Drosophila song segmenter for closed-loop applications.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•0•0•Updated Jan 29, 2026Jan 29, 2026

    • codex

      Public
      Explore the FlyWire Connectome
      webappcodexflywire
      webappcodexflywire
      Python
      •
      Apache License 2.0
      •17•71•4•0•Updated Jun 3, 2025Jun 3, 2025

    • visual-system-parts-list

      Public
      Annotations of visual neuron types in the FlyWire Connectome
      Python
      •
      Apache License 2.0
      •0•3•0•0•Updated Mar 30, 2025Mar 30, 2025

    • one2one-mapping

      Public
      Model weights, example stimuli, and code for the paper "One-to-one mapping between deep network units and real neurons uncovers a visual population code for soc…
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •2•5•0•0•Updated Jan 10, 2025Jan 10, 2025

    • fly-vr

      Public
      FlyVR is code for design and control of multisensory virtual reality experiments for flies.
      Python
      •6•7•12•0•Updated Nov 6, 2024Nov 6, 2024

    • leap_rigs

      Public
      Code for running experiments on the LEAP rigs.
      Python
      •0•1•0•0•Updated Nov 8, 2021Nov 8, 2021

    • fictrac

      Public
      FicTrac: A webcam-based method for tracking spherical motion and generating fictive animal paths.
      C++
      •
      Other
      •37•0•0•0•Updated Jun 28, 2021Jun 28, 2021

    • python-motifapi

      Public
      Python API to control Motif recording systems
      Python
      •2•0•0•0•Updated Apr 16, 2021Apr 16, 2021

    • FlyCaImAn

      Public
      Calcium Imaging Processing Pipeline of 3D time series
      MATLAB
      •2•1•0•0•Updated Mar 2, 2021Mar 2, 2021

    • sleap-notebooks

      Public
      Jupyter notebooks for running SLEAP on Google Colaboratory
      sleap
      sleap
      Jupyter Notebook
      •1•1•1•0•Updated Jan 4, 2021Jan 4, 2021

    • Meshdown

      Public
      Download 3D meshes from FlyWire via Docker
      Dockerfile
      •0•0•0•0•Updated Aug 13, 2020Aug 13, 2020

    • noIPIcycles

      Public
      code and data for Stern et al. (2017)
      MATLAB
      •3•0•0•0•Updated Aug 4, 2020Aug 4, 2020

    • MurthyLab_FlySongSegmenter

      Public
      Murthy lab version of FlySongSegmenter (FSS) - see Coen et al. Nature 2014 and Clemens et al. Curr Biol 2018
      MATLAB
      •2•2•1•0•Updated Jul 29, 2020Jul 29, 2020

    • GLMHMM

      Public
      MATLAB
      •6•24•1•0•Updated Jan 15, 2020Jan 15, 2020

    • pybmt

      Public
      Python Ball Motion Tracking (pymbt): A python interface for FicTrac (https://github.com/rjdmoore/fictrac)
      pythontrackingsphere
      pythontrackingspherefictivetrackballclosed-loopwebcameraanimal-trackingfictrac
      Python
      •
      Other
      •4•4•2•0•Updated Dec 6, 2019Dec 6, 2019

    • FLyTRAP

      Public
      Code for analyzing playback experiments in Deutsch et al. (2019).
      MATLAB
      •0•0•0•0•Updated Aug 15, 2019Aug 15, 2019

    • DeepFlyTrack

      Public
      New version of fly tracker that uses keras/deep networks to track flies
      Python
      •0•3•0•0•Updated Aug 8, 2019Aug 8, 2019

    • pulseTypePipeline

      Public
      analysis pipeline for classifying song pulses in Drosophila
      HTML
      •1•0•0•0•Updated Dec 7, 2018Dec 7, 2018

    • leap

      Public
      LEAP Estimates Animal Pose
      MATLAB
      •
      Apache License 2.0
      •47•5•0•0•Updated Jul 25, 2018Jul 25, 2018

    • pulseTypeClassifier

      Public
      pulses in, Pfast & Pslow out
      MATLAB
      •2•0•0•0•Updated Aug 27, 2017Aug 27, 2017

    • GLMvirilis

      Public
      code for fitting the GLM filters in LaRue et al. (2015)
      MATLAB
      •0•1•0•0•Updated Jul 27, 2015Jul 27, 2015

    • virilisSongSegmenter

      Public
      Code for analyzing the courtship duets of Drosophila virilis from audio recordings
      MATLAB
      •
      MIT License
      •1•0•0•0•Updated Jun 3, 2015Jun 3, 2015
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