Repositories list

• mzmine

  Public
  mzmine source code repository

  computational-chemistrymass-spectrometrygas-chromatography+ 4

  computational-chemistrymass-spectrometrygas-chromatographymass-spectrometry-imagingliquid-chromatographycomputational-mass-spectrometryliquid-chromatography-mass-spectrometry

  Java

  •

  MIT License

  •162162 forks•276276 stars•192192 issues•4949 pull requests•Updated Apr 24, 2026Apr 24, 2026

• mzmine_documentation

  Public
  mzmine_documentation

  Python

  •

  MIT License

  •3333 forks•2121 stars•1515 issues•55 pull requests•Updated Apr 21, 2026Apr 21, 2026

• mzmine.github.io

  Public
  MZmine website

  HTML

  •77 forks•33 stars•44 issues•00 pull requests•Updated Mar 2, 2026Mar 2, 2026

• ThermoRawFileParser

  Public
  Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono

  C#

  •

  Apache License 2.0

  •5858 forks•00 stars•00 issues•00 pull requests•Updated Nov 3, 2025Nov 3, 2025

• mzmine2

  Public archive
  MZmine 2 source code repository

  Java

  •

  GNU General Public License v2.0

  •127127 forks•139139 stars•235235 issues•22 pull requests•Updated May 5, 2024May 5, 2024

• biohack23_p15

  Public
  biohackeu23

  biohackeu23

  Python

  •

  MIT License

  •22 forks•33 stars•1212 issues•33 pull requests•Updated Apr 23, 2024Apr 23, 2024

• vector_db

  Public
  Python

  •

  MIT License

  •44 forks•00 stars•00 issues•00 pull requests•Updated Nov 6, 2023Nov 6, 2023

• mzwizard_presets

  Public
  MZmine batch files and presets

  MIT License

  •00 forks•22 stars•55 issues•00 pull requests•Updated Sep 7, 2023Sep 7, 2023

• ms_management_system

  Public
  11 fork•00 stars•00 issues•11 pull request•Updated Jul 13, 2023Jul 13, 2023

• sample_data

  Public
  Sample data files for MZmine

  GNU General Public License v2.0

  •11 fork•00 stars•00 issues•00 pull requests•Updated May 11, 2019May 11, 2019

• old-mzmine3

  Public
  Old development repository (outdated)

  Java

  •

  GNU General Public License v2.0

  •1717 forks•1414 stars•3636 issues•00 pull requests•Updated Aug 27, 2018Aug 27, 2018

• mzmine1

  Public
  MZmine 1 source code repository (unsupported, for reference only)

  Java

  •

  Other

  •11 fork•00 stars•00 issues•00 pull requests•Updated Mar 24, 2015Mar 24, 2015