Repositories list

• opal

  Public
  OBiBa’s core database application for biobanks or epidemiological studies.

  Java

  •

  GNU General Public License v3.0

  •2222 forks•3131 stars•1717 issues•00 pull requests•Updated Apr 22, 2026Apr 22, 2026

• mica-python-client

  Public
  Python command lines for accessing Mica web services.

  Python

  •

  GNU General Public License v3.0

  •00 forks•11 star•00 issues•22 pull requests•Updated Apr 21, 2026Apr 21, 2026

• agate-python-client

  Public
  Python command lines for accessing Agate web services.

  Python

  •

  GNU General Public License v3.0

  •11 fork•00 stars•00 issues•00 pull requests•Updated Apr 21, 2026Apr 21, 2026

• opal-python-client

  Public
  Python command lines for accessing Opal web services.

  Python

  •

  GNU General Public License v3.0

  •33 forks•44 stars•00 issues•00 pull requests•Updated Apr 19, 2026Apr 19, 2026

• opalr

  Public
  Opal R and Datashield utils

  R

  •22 forks•33 stars•44 issues•00 pull requests•Updated Apr 19, 2026Apr 19, 2026

• obiba-commons

  Public
  Reusable code for persistence, security and spring.

  Java

  •99 forks•55 stars•00 issues•00 pull requests•Updated Apr 18, 2026Apr 18, 2026

• agate

  Public
  OBiBa's user ID provider.

  Java

  •

  GNU General Public License v3.0

  •77 forks•44 stars•22 issues•00 pull requests•Updated Apr 17, 2026Apr 17, 2026

• mica2

  Public
  Mica is a web portal for epidemiological study consortia.

  Java

  •

  GNU General Public License v3.0

  •1515 forks•1313 stars•1010 issues•1818 pull requests•Updated Apr 17, 2026Apr 17, 2026

• mica-search-es8

  Public
  Java

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 15, 2026Apr 15, 2026

• docker-opal

  Public
  Shell

  •

  GNU General Public License v3.0

  •1010 forks•88 stars•55 issues•00 pull requests•Updated Apr 13, 2026Apr 13, 2026

• magma

  Public
  Data and meta-data abstraction layer.

  Java

  •

  GNU General Public License v3.0

  •1515 forks•77 stars•00 issues•11 pull request•Updated Apr 11, 2026Apr 11, 2026

• shiro-extras

  Public
  Shiro Extras

  Java

  •55 forks•00 stars•00 issues•00 pull requests•Updated Apr 11, 2026Apr 11, 2026

• Opal.jl

  Public
  Opal client in Julia

  Julia

  •

  MIT License

  •00 forks•00 stars•11 issue•77 pull requests•Updated Apr 8, 2026Apr 8, 2026

• DatashieldOpal.jl

  Public
  Julia

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•11 pull request•Updated Apr 8, 2026Apr 8, 2026

• docker-mica

  Public
  Shell

  •

  GNU General Public License v3.0

  •33 forks•00 stars•00 issues•00 pull requests•Updated Apr 5, 2026Apr 5, 2026

• docker-agate

  Public
  Shell

  •

  GNU General Public License v3.0

  •33 forks•00 stars•11 issue•00 pull requests•Updated Apr 5, 2026Apr 5, 2026

• mica-doc

  Public
  Mica documentation

  Python

  •22 forks•00 stars•11 issue•00 pull requests•Updated Apr 3, 2026Apr 3, 2026

• agate-doc

  Public
  Agate documentation

  Python

  •00 forks•11 star•00 issues•00 pull requests•Updated Apr 3, 2026Apr 3, 2026

• opal-doc

  Public
  Opal documentation

  Python

  •22 forks•33 stars•11 issue•00 pull requests•Updated Apr 3, 2026Apr 3, 2026

• obiba.github.io

  Public
  Obiba Website

  HTML

  •22 forks•00 stars•00 issues•00 pull requests•Updated Mar 31, 2026Mar 31, 2026

• resourcer

  Public
  R package to access resources identified by a URL in a uniform way

  R

  •

  GNU Lesser General Public License v2.1

  •66 forks•33 stars•22 issues•00 pull requests•Updated Mar 24, 2026Mar 24, 2026

• obiba-home

  Public
  Obiba development environment

  HTML

  •22 forks•00 stars•00 issues•00 pull requests•Updated Mar 22, 2026Mar 22, 2026

• docker-amber

  Public
  Docker images for Amber server and apps

  Dockerfile

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 21, 2026Mar 21, 2026

• amber-studio

  Public
  Content management app for Amber

  vuequasar

  vuequasar

  Vue

  •

  MIT License

  •11 fork•11 star•55 issues•00 pull requests•Updated Mar 21, 2026Mar 21, 2026

• amber

  Public
  Data collection server

  nodejsjavascriptmongodb

  nodejsjavascriptmongodb

  JavaScript

  •

  GNU General Public License v3.0

  •00 forks•00 stars•22 issues•00 pull requests•Updated Mar 21, 2026Mar 21, 2026

• plugins

  Public
  OBiBa plugins repository

  00 forks•00 stars•00 issues•00 pull requests•Updated Mar 19, 2026Mar 19, 2026

• mica-search-os2

  Public
  Java

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 19, 2026Mar 19, 2026

• micar

  Public
  R package for accessing Mica2 web services

  R

  •00 forks•00 stars•11 issue•00 pull requests•Updated Feb 6, 2026Feb 6, 2026

• docker-rock

  Public
  Rock R server in a Docker container

  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 6, 2026Feb 6, 2026

• rock

  Public
  R server with a REST API

  Java

  •

  GNU General Public License v3.0

  •11 fork•33 stars•00 issues•11 pull request•Updated Feb 6, 2026Feb 6, 2026