Repositories list

• UMLS-Types-assignor

  Public
  Machine Learning model that learns from Unified Medical Language System Metathesaurus (UMLS Metathesaurus) database tagging new graph in Semantic Network

  Jupyter Notebook

  •00 forks•22 stars•00 issues•00 pull requests•Updated Jul 28, 2022Jul 28, 2022

• bioportal_web_ui

  Public archive
  A rails application for biological ontologies, (originally from http://bioportal.bioontology.org). But reused in two project at LIRMM.

  Ruby

  •

  Other

  •4242 forks•44 stars•00 issues•00 pull requests•Updated Nov 2, 2020Nov 2, 2020

• docker-compose-bioportal

  Public
  A Docker compose to have a fully working BioPortal development environment

  XSLT

  •77 forks•11 star•00 issues•00 pull requests•Updated Jan 20, 2019Jan 20, 2019

• cladimed2skos

  Public
  SKOS version of CLADIMED

  Java

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 14, 2018Feb 14, 2018

• biotex

  Public
  Biotex application (automatic extraction of biomedical terms)

  Java

  •55 forks•44 stars•00 issues•00 pull requests•Updated Dec 8, 2017Dec 8, 2017

• UnitexRecognizer

  Public
  Workflow to use Unitex with the SIFR Annotator

  C++

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 1, 2017Dec 1, 2017

• paradise_extractor

  Public
  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 27, 2017Jul 27, 2017

• sifr_project_java_ontology_processing

  Public
  Java Scripts to process Ontologies using OWLAPI for the SIFR project

  Java

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 17, 2017Jul 17, 2017

• Heuristics

  Public
  Java

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 6, 2017Apr 6, 2017

• umls2rdf

  Public
  These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This is part of the BioPort…

  Python

  •

  Other

  •3535 forks•11 star•00 issues•00 pull requests•Updated Apr 5, 2017Apr 5, 2017

• multilingual_mappings

  Public
  Web Ontology Language

  •22 forks•00 stars•11 issue•00 pull requests•Updated Feb 10, 2017Feb 10, 2017

• viewpoints_xps

  Public
  Misc experimentations of the Viewpoints project.

  00 forks•00 stars•00 issues•00 pull requests•Updated Dec 14, 2016Dec 14, 2016

• purl_servlet

  Public
  A simple servlet to resolve purl.lirmm.fr URIs

  Java

  •00 forks•11 star•00 issues•00 pull requests•Updated Oct 4, 2016Oct 4, 2016

• bioportal_import_ontologies

  Public
  Ruby scripts to import ontologies from BioPortal or cropontology.org to a BioPortal Appliance

  Ruby

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 3, 2015Jul 3, 2015

• lexicon_builder

  Public
  Dictionnary/lexicon creation from a BioPortal ontology repository

  Java

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 1, 2015Jun 1, 2015

• semanticdistance_wa

  Public
  Project of Pierre and Olivier for semantic distance web application.

  PHP

  •

  MIT License

  •11 fork•00 stars•00 issues•11 pull request•Updated Apr 6, 2015Apr 6, 2015

• viewpoints_kernel

  Public
  This is the Kernel module of the ViewpointS API, an awesome java Subjective Knowledge Representation API based one the ViewpointS formalism

  Java

  •

  GNU General Public License v2.0

  •00 forks•22 stars•00 issues•00 pull requests•Updated Mar 11, 2015Mar 11, 2015

• biotex_wa

  Public
  Java (Servlet/JSP) interface of the BioTex application

  XML

  •22 forks•00 stars•00 issues•00 pull requests•Updated Feb 18, 2015Feb 18, 2015

• annotator_addons

  Public
  Soumia Melzi's project. Contains enhancement of the NCBO Annotator. Cf SWAT4LS 2014 papers

  Java

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 18, 2015Feb 18, 2015

• viewpoints_wa

  Public
  Viewpoints Web Application

  XML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 16, 2015Feb 16, 2015

• viewpoints_io

  Public
  This is the ViewpointS import/export module. It index web data, it allow to exchange viewpoints data in xml format, it manage the persistence thanks to Neo4J.

  Java

  •

  GNU General Public License v2.0

  •00 forks•11 star•00 issues•00 pull requests•Updated Feb 9, 2015Feb 9, 2015