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@sydneycytometry Sydney Cytometry

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    12 repositories

    • CSV-to-FCS

      Public
      A short script for converting .csv file data into an .fcs file, and vise versa.
      R
      •16•18•2•1•Updated Apr 2, 2021Apr 2, 2021

    • tSNEplots

      Public
      An R script for automatically creating coloured tSNE plots
      R
      •5•7•1•0•Updated Apr 2, 2021Apr 2, 2021

    • Spectre

      Public
      A computational toolkit in R for the integration, exploration, and analysis of high-dimensional single-cell cytometry data.
      R
      •
      MIT License
      •23•2•0•0•Updated Mar 10, 2021Mar 10, 2021

    • CATALYST

      Public
      Cytometry dATa anALYsis Tools
      R
      •32•0•0•0•Updated Nov 25, 2019Nov 25, 2019

    • CytoTools

      Public
      Useful small scripts for cytometry data management
      R
      •
      MIT License
      •3•3•0•0•Updated Jul 29, 2019Jul 29, 2019

    • CAPX

      Public
      Cytometry analysis pipeline for large and complex datasets (CAPX) (beta)
      tsnecytometry-datacytometry-analysis-pipeline
      tsnecytometry-datacytometry-analysis-pipeline
      R
      •
      MIT License
      •6•4•1•0•Updated Jul 12, 2019Jul 12, 2019

    • IMC-ROI-annotation

      Public
      An R script to facilitate the annotation and modification of Imaging Mass Cytometry (IMC) ROI data
      R
      •0•0•0•0•Updated Jul 3, 2019Jul 3, 2019

    • AutoGraph

      Public
      A looped script to create a series of group comparison bar graphs or dot plots
      R
      •0•2•0•0•Updated Jun 2, 2019Jun 2, 2019

    • Chronoclust

      Public
      Python
      •
      GNU General Public License v3.0
      •4•0•0•0•Updated Mar 27, 2019Mar 27, 2019

    • cytofWorkflow

      Public
      Package Homepage: http://bioconductor.org/packages/devel/bioc/html/cytofWorkflow.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=cytofWor…
      6•1•0•0•Updated Jan 7, 2019Jan 7, 2019

    • Adaptable-RtSNE

      Public
      A script to utilise the flexibility of a modifiable RtSNE package.
      R
      •0•0•1•0•Updated Oct 11, 2017Oct 11, 2017

    • spillover-spreading-calculator

      Public
      A brief script for calculating spillover-spreading error from one fluorophore into a non-target detector
      R
      •0•1•0•0•Updated Jun 24, 2017Jun 24, 2017
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