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@systemsecologygroup Systems Ecology Group

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    25 repositories

    • N2-fixers-in-the-ocean

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Mar 10, 2026Mar 10, 2026

    • Coral_Recruitment

      Public
      MATLAB
      •0•0•0•0•Updated Aug 18, 2025Aug 18, 2025

    • TempSizeMod

      Public
      Size-based NPZD model for forecasting the effects of temperature on phytoplankton community compositions in a temperate lake
      Python
      •1•0•0•0•Updated Feb 5, 2025Feb 5, 2025

    • UCYN-A

      Public
      MATLAB
      •0•0•0•0•Updated Jan 7, 2025Jan 7, 2025

    • NCD_Global_2024

      Public
      Files related to the paper 'Relevance of non-cyanobacterial N2 fixation in the global ocean'
      Python
      •0•0•0•0•Updated Nov 28, 2024Nov 28, 2024

    • Sizeb_NPZD

      Public
      Size-based NPZD model for understanding phytoplankton community size structure
      Python
      •
      Creative Commons Zero v1.0 Universal
      •1•0•0•0•Updated Mar 12, 2024Mar 12, 2024

    • SbNPZD_Exclusion

      Public
      Size-based NPZD model for understanding phytoplankton exclusion patterns (co-occurrence and exclusion time scales)
      Python
      •1•0•0•0•Updated Sep 20, 2023Sep 20, 2023

    • noise-in-opinion-dynamics

      Public
      Different types of noise that affect opinion dynamics implemented in the bounded confidence model by Deffuant et al. (2000).
      Python
      •0•0•0•0•Updated Jul 24, 2023Jul 24, 2023

    • Automatic-Measurements-of-Fishes-physical-traits-V2

      Public
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Jul 14, 2023Jul 14, 2023

    • EasterIslandABM

      Public
      An Agent-Based Model that simulates the spatial and temporal dynamics of household agents on Easter Island and their interactions with a spatially explicit and …
      Python
      •
      MIT License
      •0•0•0•0•Updated Jun 20, 2023Jun 20, 2023

    • social-identity-in-opinion-dynamics

      Public
      Model to study the effect of in-group bias on consensus formation in virtual societies
      Python
      •2•0•0•0•Updated Jun 19, 2023Jun 19, 2023

    • Calcisphere

      Public
      Calculate the energy requirements for calcium transport into vesicles vs over the plasma membrane in calcifying nannoplankton.
      Python
      •0•0•0•0•Updated Feb 1, 2023Feb 1, 2023

    • InsidePhy

      Public
      A python package for modelling inter- and intra-specific size variability of phytoplankton communities grown under laboratory conditions.
      Python
      •
      MIT License
      •3•1•0•0•Updated Jun 2, 2022Jun 2, 2022

    • CoralZooxShuffle

      Public
      Python
      •0•0•0•0•Updated Apr 23, 2022Apr 23, 2022

    • CoralZooxProjection

      Public
      Adaptive trait dynamics model used to simulate future projections of coral and algae biomasses under low (RCP 2.6), moderate (RCP 4.5) and high (RCP 8.5) warmin…
      Python
      •2•1•0•0•Updated Apr 11, 2022Apr 11, 2022

    • AMT

      Public
      Image-recognition type algorithm for extracting morphological trait data from fish photographs.
      Jupyter Notebook
      •1•0•0•0•Updated Jan 15, 2020Jan 15, 2020

    • BirdsABM

      Public
      Agent-Based Model for studying waterbird habitat use in coastal lagoon-like environments
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 10, 2020Jan 10, 2020

    • CoralZooxSymb

      Public
      Code used for the manuscript "A Trait-Based Model for Describing the Adaptive Dynamics of Coral-Algae Symbiosis"
      Python
      •1•1•0•0•Updated Oct 24, 2019Oct 24, 2019

    • PlAcE_R

      Public
      Plastic Accumulation Estimation using R (PlAceR)
      R
      •1•0•0•0•Updated Sep 10, 2019Sep 10, 2019

    • CoopFishABM

      Public
      Agent-Based Model for studying the effects of different MPA designs and cooperation levels on fish abundance and catch
      Python
      •2•0•0•0•Updated Jun 2, 2019Jun 2, 2019

    • PlanktonBS

      Public
      Differential Equation-Based Model for studying the seasonal succession of phytoplankton in the Bering Sea.
      C++
      •2•1•0•0•Updated Jun 1, 2019Jun 1, 2019

    • BayBoxTOY

      Public
      Differential Equation-Based toy model for studying carbon fluxes in a bay
      Python
      •0•1•0•0•Updated May 30, 2019May 30, 2019

    • PhytoSFDM

      Public
      A python package to quantify phytoplankton community size structure in the ocean
      Python
      •
      GNU General Public License v2.0
      •3•4•0•0•Updated May 28, 2019May 28, 2019

    • OGUMIserver

      Public
      JavaScript
      •
      Apache License 2.0
      •2•0•0•0•Updated Apr 26, 2017Apr 26, 2017

    • OGUMIclient

      Public
      CoffeeScript
      •
      Apache License 2.0
      •2•0•0•0•Updated Apr 24, 2017Apr 24, 2017
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