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13 repositories

psimodpy
Public
Python library for parsing and querying the PSIMOD post-translational modification (PTM) controlled vocabulary.
ontology protein psi
ontology protein psi proteomics omics ptm peptide
Python
•
MIT License
•0•0•0•0•Updated Apr 25, 2026Apr 25, 2026
uniprotptmpy
Public
Python library for parsing and querying the UniProt post-translational modification (PTM) controlled vocabulary.
ontology protein proteomics
ontology protein proteomics omics ptm uniprot peptide
Python
•
MIT License
•0•0•0•0•Updated Apr 25, 2026Apr 25, 2026
unimodpy
Public
Python library for parsing and querying the UNIMOD post-translational modification (PTM) controlled vocabulary.
ontology protein psi
ontology protein psi proteomics omics ptm peptide unimod
Python
•
MIT License
•0•0•0•0•Updated Apr 25, 2026Apr 25, 2026
peptacular
Public
A Python package for peptide sequence analysis built around ProForma 2.1 notation. Calculate masses, generate fragments, predict isotopic patterns, and more.
python bioinformatics protein
python bioinformatics protein proteomics mass-spectrometry peptide-identification peptides peptide-sequences
Python
•
MIT License
•2•16•0•0•Updated Apr 14, 2026Apr 14, 2026
spxtacular
Public
spxtacular is a Python library for mass spectrometry spectrum processing. It provides a chainable Spectrum API covering the full centroid-to-neutral-mass pipeli…
spectrum proteomics mass-spectrometry
spectrum proteomics mass-spectrometry omics bruker mzml
Python
•
MIT License
•0•1•0•0•Updated Apr 13, 2026Apr 13, 2026
tdfextractor
Public
A Python package to extract MS/MS spectra from Bruker TimsTOF .D folders and convert them to standard formats (MS2, MGF, and mzML).
proteomics mass-spectrometry bruker
proteomics mass-spectrometry bruker ms2 mgf
Python
•
MIT License
•0•2•0•0•Updated Apr 10, 2026Apr 10, 2026
mzmlpy
Public
A lightweight Python library for parsing mzML
python proteomics mass-spectrometry
python proteomics mass-spectrometry mzml
Python
•0•1•0•0•Updated Apr 10, 2026Apr 10, 2026
tdfpy
Public
Python package for parsing Bruker timsTOF data with centroiding and noise filtering
python mass-spectrometry bruker
python mass-spectrometry bruker timstof
Python
•
MIT License
•0•5•0•0•Updated Apr 10, 2026Apr 10, 2026
.github
Public
0•0•0•0•Updated Apr 8, 2026Apr 8, 2026
peff_uniprot_fetcher
Public
Generate PEFF (PSI Extended FASTA Format) files from the UniProt REST API. Fetches protein sequences and GFF annotations (variants, PTMs, processed forms) and w…
Python
•
MIT License
•0•0•0•0•Updated Apr 7, 2026Apr 7, 2026
tacular
Public
Lookup for various omics datatypes: Amino Acids, PTMs, Elements...
Python
•
MIT License
•0•0•0•0•Updated Mar 27, 2026Mar 27, 2026
paftacular
Public
A Python library for parsing and serializing mzPAF (Peak Annotation Format), a standardized format for annotating mass spectrometry fragment ions in peptide/pro…
fragment psi proteomics
fragment psi proteomics omics peptides proforma peptide-fragments mzpaf
Python
•
MIT License
•0•1•0•0•Updated Mar 20, 2026Mar 20, 2026
pefftacular
Public
Python library for reading and writing PEFF (PSI Extended FASTA Format) files. PEFF is a superset of FASTA used in proteomics that carries rich per-entry annota…
protein psi fasta
protein psi fasta proteomics omics ptm uniprot peff
Python
•
MIT License
•0•1•0•0•Updated Mar 20, 2026Mar 20, 2026

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tacular-omics

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13 repositories

psimodpy

uniprotptmpy

unimodpy

peptacular

spxtacular

tdfextractor

mzmlpy

tdfpy

.github

peff_uniprot_fetcher

tacular

paftacular

pefftacular

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13 repositories