Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis in R

This tutorial is about analyzing single-cell RNA-ATAC multiomic data. It includes three sections:

1. The mono-modal analysis focusing on only the RNA or the ATAC data;
2. The bi-modal integrative analysis using both modalities;
3. Gene regulatory network reconstruction using Pando.

The example data used in this tutorial is a part of the paper "Fate and state transitions during human blood vessel organoid development".

If you are interested in doing scMultiome data analysis with Python, check out the other tutorial we prepared.

Please contact Dr. Zhisong He (zhisong.he(at)bsse.ethz.ch) or Prof. Barbara Treutlein (barbara.treutlein(at)bsse.ethz.ch) if there is any question.