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Popular repositories Loading

  1. Structural-Hormesis-in-Protein-Aggregation Structural-Hormesis-in-Protein-Aggregation Public

    Python scripts for paper "Structural hormesis in protein aggregation: A minimal mechanistic model" [bioRxiv DOI: 10.1101/2025.10.07.681066]

    Python 1

  2. lumping-of-reaction-networks lumping-of-reaction-networks Public

    Python tools for analyzing linear lumping of mass action reaction networks. Identifies critical parameters where non-trivial dimension reductions become available. Accompanies "Lumping of reaction …

    Python 1 1

  3. Pareto-UPR-Feedback-Control Pareto-UPR-Feedback-Control Public

    Python scripts used to simulate the model and calculate Pareto sets from paper "How to design an optimal sensor network for the unfolded protein response" [Mol Biol Cell 29 (2018), 3052-3062]. All …

    Python

  4. Estimation-Oscillations-Period Estimation-Oscillations-Period Public

    Matlab code for estimate statistically significant periods of oscillations in time course data [PLoS One 9 (2014), e93826]

    MATLAB

  5. Macroscopic-Simulations-Microtubule-Dynamics Macroscopic-Simulations-Microtubule-Dynamics Public

    Matlab code for "Macroscopic simulations of microtubule dynamics predict two steady-state processes governing array morphology" [Comput Biol Chem 35 (2011), 269-281]

    MATLAB

  6. Predicting-Neuroblastoma-Logic-Based-Model Predicting-Neuroblastoma-Logic-Based-Model Public

    Python code to reproduce results from the paper "Predicting neuroblastoma using developmental signals and a logic-based model" [Biophys Chem 238 (2018), 30-38]

    Python