add MiloDE#1001

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Zethson merged 11 commits into

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feat/milode-de-nhoods

May 28, 2026

Commits on May 27, 2026

milo: add de_nhoods (miloDE) for per-neighbourhood DE testing

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docs: add docstring preview for milo.de_nhoods

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milo: de_nhoods returns long DataFrame, matching pertpy DE convention

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docs: add example previews for milo.de_nhoods plotting recipes

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milo: add plot_de_nhood_graph for one-line per-gene DE visualization

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docs: bump tutorials submodule for miloDE section

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milo: silence per-nhood pydeseq2 stdout in de_nhoods + bump tutorial

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