[3/3] cp_measure features + coordinate alignment for calculate_image_features#1216
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Codecov Report❌ Patch coverage is
Additional details and impacted files@@ Coverage Diff @@
## main #1216 +/- ##
==========================================
+ Coverage 76.55% 76.72% +0.17%
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Files 63 63
Lines 9067 9148 +81
Branches 1521 1527 +6
==========================================
+ Hits 6941 7019 +78
- Misses 1541 1543 +2
- Partials 585 586 +1
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Final piece of scverse#982 (split from scverse#1189, scverse#1190): wires cp_measure into calculate_image_features and adds image/labels coordinate-system alignment (align_mode strict/rasterize), with boundary-cell drop accounting. - deps: cp-measure>=0.1.19,<0.2, centrosome>=1.2.3 (hard) - features=None now runs all features across all backends - _tiling: bbox_y0/bbox_x0 on CellInfo; _Accum accumulator; shared yx_size - key_added (was adata_key_added); keyword-only params - skimage backend: single regionprops_table pass for morphology+intensity - dedupe skimage morphology vs cp_measure:sizeshape when both requested (cp wins, computed identically; skimage-only props kept) - purge non-ASCII em/en-dashes from text files repo-wide (ASCII-only policy)
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Final piece of #982 (split from #1189, #1190). Adds cp_measure features and image/labels coordinate alignment.
New deps (hard)
cp-measure>=0.1.19,<0.2,centrosome>=1.2.3.Usage
features=None-> all features, all backends (needs an image).align_mode="strict"(default) raises on non-pixel-aligned image/labels;"rasterize"resamples onto the image grid.Notes
rasterizeraises (pre-align instead).