Initial framework of the niche refactor - #1245

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shashkat wants to merge 26 commits into

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shashkat:niche_refactor

Commits on Jul 13, 2026

added changes from the bugfix in nhood profile (#1229)
shashkat
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Commits on Jul 14, 2026

adding sanitize_adata before updating table in case of sdata in calculate_niche() so that writing test case for sdata is possible
shashkat
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Commits on Jul 15, 2026

added some basic test cases for calculate_niche() before refactoring it
shashkat
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Commits on Jul 19, 2026

updated the required, optional and unused params for different flavors
shashkat
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Commits on Jul 21, 2026

Commits on Jul 23, 2026

Commits on Jul 24, 2026

reduced _calculate_neighborhood_profile arguments as it takes from class attributes
shashkat
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Commits on Jul 28, 2026

Commits on Jul 29, 2026

added niche functions and classes imports
shashkat
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