Preserve Scanpy plotting compatibility across layouts - #1248
Open
stanbot8 wants to merge 1 commit into
Open
Conversation
Codecov Report❌ Patch coverage is
Additional details and impacted files@@ Coverage Diff @@
## main #1248 +/- ##
==========================================
+ Coverage 77.24% 77.28% +0.04%
==========================================
Files 63 63
Lines 9378 9401 +23
Branches 1579 1583 +4
==========================================
+ Hits 7244 7266 +22
Misses 1532 1532
- Partials 602 603 +1
🚀 New features to boost your workflow:
|
stanbot8
marked this pull request as ready for review
August 1, 2026 07:15
stanbot8
force-pushed
the
draft/test-scanpy-plotting-layout-compatibility
branch
from
August 1, 2026 07:56
2cea0ab to
afdcfb8
Compare
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
1 participant
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Scanpy relocated private plotting helpers into its legacy package, so Squidpy no longer imports against the prerelease dependency. Import Squidpy against Scanpy after scverse/scanpy#4188 and reproduce the prerelease CI failure:
scanpy.plotting._toolsis absent.This change routes Scanpy plotting helpers, palettes, and mutable settings through Squidpy's compatibility boundary. Focused plotting tests exercise both supported layouts.