biotrans_cli

Biological Data file format transformation using Command Line Interface scripts.

Name		Name	Last commit message	Last commit date
Latest commit History 16 Commits
BPP		BPP
MSMC2		MSMC2
fineSTRUCTURE		fineSTRUCTURE
.DS_Store		.DS_Store
.gitignore		.gitignore
README.md		README.md
SNPEFF2tsv.py		SNPEFF2tsv.py
VCF2PopCluster.py		VCF2PopCluster.py
VCF_dip2hap.py		VCF_dip2hap.py
add_EGIgeno_from_vcf.py		add_EGIgeno_from_vcf.py
add_EGIgeno_from_vcf_correct.py		add_EGIgeno_from_vcf_correct.py
beagle2treemix.py		beagle2treemix.py
cal_freq_from_merged_loter_popseg.py		cal_freq_from_merged_loter_popseg.py
change_vcf_POS.py		change_vcf_POS.py
extract_vcf_info.py		extract_vcf_info.py
fasta2phylip.py		fasta2phylip.py
fetchBAMQCDepth.py		fetchBAMQCDepth.py
fetchBeaglefile.py		fetchBeaglefile.py
fetchFastq.py		fetchFastq.py
fetch_mRNA_from_gtf.py		fetch_mRNA_from_gtf.py
fetch_samples_from_newick.py		fetch_samples_from_newick.py
filterFastaGap.py		filterFastaGap.py
filterTreemixInput.py		filterTreemixInput.py
generate_Dstat_parfile.py		generate_Dstat_parfile.py
generate_f3_parfile.py		generate_f3_parfile.py
gff2sqliteDB.py		gff2sqliteDB.py
gff_to_selscan_bed.py		gff_to_selscan_bed.py
group_mRNA_from_gff.py		group_mRNA_from_gff.py
maskVCF_lowQualityGT.py		maskVCF_lowQualityGT.py
maskVCF_phasedGT.py		maskVCF_phasedGT.py
mask_ancient_transi.py		mask_ancient_transi.py
merge_loter_result.py		merge_loter_result.py
merge_plink2_afreq.py		merge_plink2_afreq.py
merge_stringtie_gene_abund.py		merge_stringtie_gene_abund.py
npy2tsv.py		npy2tsv.py
plinkfreq2Treemix_2021.py		plinkfreq2Treemix_2021.py
plinkfreq2treemix.py		plinkfreq2treemix.py
plinkfreq2treemix_old.py		plinkfreq2treemix_old.py
plinkfreq_reform.py		plinkfreq_reform.py
produce_bcftools_call.py		produce_bcftools_call.py
produce_sention_bwa.py		produce_sention_bwa.py
read_realSFS.py		read_realSFS.py
rename_fasta_chromosomes.py		rename_fasta_chromosomes.py
resample_vcf.py		resample_vcf.py
shuffle_vcf.py		shuffle_vcf.py
split_beagleGL_toInd.py		split_beagleGL_toInd.py
split_egi.py		split_egi.py
split_plink_afreq.py		split_plink_afreq.py
stat_Sprime.py		stat_Sprime.py
vcf2DFOIL.py		vcf2DFOIL.py
vcf2IUPACGT.py		vcf2IUPACGT.py
vcf2Loter.py		vcf2Loter.py
vcf2TreeMix_ind.py		vcf2TreeMix_ind.py
vcf2betascan.py		vcf2betascan.py
vcf2callformat.py		vcf2callformat.py
vcf2excel.py		vcf2excel.py
vcf2fasta_hap.py		vcf2fasta_hap.py
vcf2treemix.py		vcf2treemix.py
vcf_het_to_hom.py		vcf_het_to_hom.py

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