bifrost_bridge

bifrost_bridge converts outputs from multiple bioinformatics QC tools into normalized TSV files and can combine them into a single QC table.

Development

python3 -m venv .venv
source .venv/bin/activate
pip install -e .[dev]
pytest

CLI

Installed commands:

• bridge_mlst
• bridge_fastp
• bridge_quast
• bridge_plasmidfinder
• bridge_amrfinderplus
• bridge_bracken
• bridge_pmlst
• bridge_rmlst
• bridge_shovill
• bridge_ssiamb
• bridge_qc

Use --help on each command for arguments.