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Include HUGO gene symbol in eqtl data sets

Status: Open.

#17 In statgen/bravo_data_prep;

· grosscol opened on Mar 5, 2025

Use rs id to index eqtl data

Status: Open.

#16 In statgen/bravo_data_prep;

· grosscol opened on Jan 29, 2025

Calculate depth from allele depth for vcfs without dp field

Status: Open.

#14 In statgen/bravo_data_prep;

· xiaoh11 opened on Feb 12, 2024

Add samples count step as a results output

Status: Open.

#9 In statgen/bravo_data_prep;

· grosscol opened on Dec 6, 2023

Extract allele frequency data from 1000G VCFs

Status: Open.

#5 In statgen/bravo_data_prep;

· grosscol opened on Apr 28, 2023

Coverage: investigate and better handle tabix indexing concatenated bgzipped files.

Status: Open.

#4 In statgen/bravo_data_prep;

· grosscol opened on Mar 3, 2023

Add input vcf validation step to prepare vcf pipeline

Status: Open.

#2 In statgen/bravo_data_prep;

· grosscol opened on Jul 12, 2022

Extract data processing custom tools to own repos

Status: Open.

#1 In statgen/bravo_data_prep;

· grosscol opened on May 4, 2022