pysynthbio is an Python package that provides a convenient interface to the Synthesize Bio API, allowing users to generate realistic gene expression data based on specified biological conditions. This package enables researchers to easily access AI-generated transcriptomic data for various modalities including bulk RNA-seq and single-cell RNA-seq.
If you'd prefer 1-click dataset generation and analysis, try our web platform.
Create a Synthesize Bio account and generate an API Key.
pip install pysynthbio
import pysynthbio
# Set your API token (or use environment variable SYNTHESIZE_API_KEY)
pysynthbio.set_synthesize_token(use_keyring=True)
# Get an example query for the bulk RNA-seq baseline model
query = pysynthbio.get_example_query(model_id="gem-1-bulk")["example_query"]
# Generate synthetic expression data
result = pysynthbio.predict_query(query, model_id="gem-1-bulk")
# Access the results
metadata = result["metadata"]
expression = result["expression"]Get Started | Full Documentation
This repo also includes public Mintlify-compatible docs source under docs-external/ for aggregation into the shared docs site via mintlify/multirepo-action.
docs-external/docs.jsondefines the SDK navigation used by the aggregatordocs-external/*.mdxanddocs-external/models/*.mdxcontain the customer-facing Mintlify content- In the aggregated site, these pages are prefixed with the repo name, so the SDK lives under
/pysynthbio/...
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