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alitinet merged 2 commits into from
Dec 16, 2025
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V0.3.2 #86

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2c611e1
updated tutorials
alitinet Dec 16, 2025
c23b7c4
updated for v0.3.2
alitinet Dec 16, 2025
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16 changes: 16 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -8,6 +8,22 @@ and this project adheres to [Semantic Versioning][].
[keep a changelog]: https://keepachangelog.com/en/1.0.0/
[semantic versioning]: https://semver.org/spec/v2.0.0.html

## [0.3.2] - 2025-12-16

### Added

- tutorial for regression
- support for sample-covariate embeddings, experimental, only one-hot

### Changed

- removed `muon` from dependencies for tutorials
- changed the classification tutorial to include training across 3 CV folds

## Fixed

- fixed a bug in regression which was caused by a wrong key when accessing the continuous covariates registered with scvi-tools

## [0.3.1] - 2025-07-14

### Fixed
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5 changes: 4 additions & 1 deletion README.md
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Expand Up @@ -17,6 +17,9 @@ Please refer to the [documentation][link-docs]. In particular, the
and the tutorials:

- [Classification with MIL](https://multimil.readthedocs.io/en/latest/notebooks/mil_classification.html) [![Open In Colab][badge-colab]](https://colab.research.google.com/github/theislab/multimil/blob/main/docs/notebooks/mil_classification.ipynb)
- [Regression with MultiMIL](https://multimil.readthedocs.io/en/latest/notebooks/mil_regression.html) [![Open In Colab][badge-colab]](https://colab.research.google.com/github/theislab/multimil/blob/main/docs/notebooks/mil_regression.ipynb)

Please also check out our [sample prediction pipeline](https://github.com/theislab/sample-prediction-pipeline), which contains MultiMIL and several other baselines.

## Installation

Expand Down Expand Up @@ -59,7 +62,7 @@ If you found a bug, please use the [issue tracker][issue-tracker].

## Reproducibility

Code and notebooks to reproduce the results from the paper are available at [theislab/multimil_reproducibility](/https://github.com/theislab/multimil_reproducibility).
Code and notebooks to reproduce the results from the paper are available at [theislab/multimil_reproducibility](https://github.com/theislab/multimil_reproducibility).

[issue-tracker]: https://github.com/theislab/multimil/issues
[changelog]: https://multimil.readthedocs.io/en/latest/changelog.html
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527 changes: 408 additions & 119 deletions docs/notebooks/mil_classification.ipynb
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