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LaurenQ2 / Microbiome-Analysis-in-QIIME2

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Microbiome analysis pipeline with reference tutorial. This code was written in October 2024 to process rRNA marker gene data (16S and ITS) from rhizosphere soil samples.

unite high-throughput-sequencing 16s soil-sample rrna taxonomy-assignment its microbiome-analysis mafft dada2 marker-gene-analysis greengenes qiime2 microbiome-workflow fasttree microbiome-analysis-pipelines soil-microbiome rhizospheres
  • Updated Feb 4, 2025
  • Shell

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