Plant phenotyping with image analysis

A versatile, fully open-source pipeline to extract phenotypic measurements from plant images

Plant Phenotyping APP

The official repository for the paper: Scalable learning for bridging the species gap in image-based plant phenotyping.

Regression in Convolutional Neural Network applied to Plant Leaf Count

Greenotyper is a plant phenotyping tool used for detecting multiple plants on an image and measuring size and greenness of each individual plant over time.

Main repo for the running/training on the dataset presented in 'High-fidelity Wheat Plant Reconstruction using 3D Gaussian Splatting and Neural Radiance Fields'

We present here a 1D convolutional neural network model to predict grain protein content using spectroscopic data of multiple cereals

[ISPRS P&RS] Unsupervised shape-aware SOM down-sampling for plant point clouds

Code for taking measurements from images of an object on top of a calibration pattern.

Batch process FLIR radiometric (thermal) JPEGs and generate clean lossless images with consistent scale and palette

Phenome 2020 Digital Phenotyping workshop materials

Modular, Scalable Phenomic Data Processing Pipelines

A modular software architecture for Automatic Plant Phenotyping

Header-only C++11 library using OpenCV for high-throughput image-based plant phenotyping

植物根系图像形态参数（总根长、平均直径、总表面积、总体积）批量提取方法及 Python 代码，并提供交互界面程序，支持打包为可执行文件。Batch extraction of root morphological parameters (total length, average diameter, total surface area, total volume) from plant root images with Python code, plus an interactive GUI tool that can be packaged as an executable.

Detecting phenotypic traits such as leaf and collar count in soybean plants using deep learning

A repository with notes from the seminar given on 28 November 2018.

A comparison of classical and machine learning-based phenotype prediction methods on simulated data and three plant species

Automated segmentation and volumetric analysis of individual plants from 3D point clouds using smart spatial clustering and voxel-based measurements