Computational Cognitive Neuroscience textbook

Axon is a spiking, biologically-based neural model driven by predictive error-driven learning, for systems-level models of the brain

A complete introduction to Computational Cognitive Neuroscience, where computer models of the brain are used to understand a wide range of cognitive functions, including perception, attention, learning, memory, motor control, executive function, and language

Model from Tsuda B, Tye KM, Siegelmann HT, Sejnowski TJ. A modeling framework for adaptive lifelong learning with transfer and savings through gating in the prefrontal cortex. Proceedings of the National Academy of Sciences, 117 (47), 29872-29882, 2020. https://doi.org/10.1073/pnas.2009591117

Simulates prefrontal cortex functions through specialized AI agents. By implementing a brain-inspired architecture, it assists in complex decision-making tasks across various domains including medical diagnosis, risk assessment, and strategic planning.

website for CCN book, hosted at book.compcogneuro.org

Scripts for reproducing the figures of Hippocampal-Prefrontal Interactions during Spatial Decision-Making, Tavares & Tort 2020.

Initial exploratory code into coherence at track points of interest.

Giving ChatGPT some social inhibitions

Code for "Functional connectivity fingerprints of the frontal eye field and inferior frontal junction suggest spatial versus nonspatial processing in the prefrontal cortex" (European Journal of Neuroscience, 2023). Includes MEG preprocessing, seed-based connectivity analysis, source reconstruction, and all figure-generating scripts.

Code for "Selective control of prefrontal neural timescales by parietal cortex" (Nature Communications, 2026). Includes timescale estimation, robust regression, SVM decoding, and all figure-generating scripts.

Scripts for reproducing the figures of Hippocampal-Prefrontal Interactions during Spatial Decision-Making, Tavares & Tort 2020.

Unsupervised clustering and differential expression of GABAergic interneuron markers in postmortem DLPFC: schizophrenia vs. control (GSE53987)