(#12) adding generator for BWA workflow

Author: rafaelfsilva

docs/source/dev_api_generator.rst

@@ -24,6 +24,26 @@ workflowhub.generator.workflow.abstract\_recipe
    :show-inheritance:
    :private-members:
 
+workflowhub.generator.workflow.blast\_recipe
+--------------------------------------------
+
+.. automodule:: workflowhub.generator.workflow.blast_recipe
+   :members:
+   :undoc-members:
+   :show-inheritance:
+   :private-members:
+   :noindex:
+
+workflowhub.generator.workflow.bwa\_recipe
+------------------------------------------
+
+.. automodule:: workflowhub.generator.workflow.bwa_recipe
+   :members:
+   :undoc-members:
+   :show-inheritance:
+   :private-members:
+   :noindex:
+
 workflowhub.generator.workflow.cycles\_recipe
 ---------------------------------------------
 

docs/source/user_api_generator.rst

@@ -14,6 +14,22 @@ workflowhub.generator.generator
    :undoc-members:
    :show-inheritance:
 
+workflowhub.generator.workflow.blast\_recipe
+--------------------------------------------
+
+.. automodule:: workflowhub.generator.workflow.blast_recipe
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+workflowhub.generator.workflow.bwa\_recipe
+------------------------------------------
+
+.. automodule:: workflowhub.generator.workflow.bwa_recipe
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
 workflowhub.generator.workflow.cycles\_recipe
 ---------------------------------------------
 

workflowhub/generator/__init__.py

@@ -9,5 +9,5 @@
 # (at your option) any later version.
 
 from .generator import WorkflowGenerator
-from .workflow import BLASTRecipe, CyclesRecipe, EpigenomicsRecipe, GenomeRecipe, MontageRecipe, MontageDataset, \
-    SeismologyRecipe, SoyKBRecipe, SRASearchRecipe
+from .workflow import BLASTRecipe, BWARecipe, CyclesRecipe, EpigenomicsRecipe, GenomeRecipe, MontageRecipe, \
+    MontageDataset, SeismologyRecipe, SoyKBRecipe, SRASearchRecipe

workflowhub/generator/workflow/__init__.py

@@ -9,6 +9,7 @@
 # (at your option) any later version.
 
 from .blast_recipe import BLASTRecipe
+from .bwa_recipe import BWARecipe
 from .cycles_recipe import CyclesRecipe
 from .epigenomics_recipe import EpigenomicsRecipe
 from .genome_recipe import GenomeRecipe