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@x-atlas-consortia

Atlas Consortia

A place for consortia who produce biologic data organized into atlases to share software resources.

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  1. ubkg-neo4j ubkg-neo4j Public

    A container implementation to serve the Unified Biomedical Knowledge Graph in Neo4j

    Shell 2

  2. ubkg-etl ubkg-etl Public

    A framework that combines data from the UMLS with assertions from other data sources into a set of CSV files that can be imported into neo4j to build a Unified Biomedical Knowledge Graph (UBKG)

    Python 7 1

  3. data-ingest-board data-ingest-board Public

    The UI App for HuBMAP and Sennet Data Publishing Dashboard

    JavaScript 1 1

  4. hra-api hra-api Public

    HRA-API: Human Reference Atlas API

    Jupyter Notebook

  5. hra-pop hra-pop Public

    HRApop

    JavaScript 2 1

  6. hs-ontology-api hs-ontology-api Public

    Ontology API built on top of the UBKG API and shared by HuBMAP and SenNet projects

    Python 2

Repositories

Showing 10 of 54 repositories
  • jobq Public

    Package to facilitate queueing of jobs using Redis

    x-atlas-consortia/jobq’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Apr 23, 2026
  • json-knowledge-graph Public

    JSON Knowledge Graph (JKG): specification and infrastructure to generate and exchange knowledge graphs

    x-atlas-consortia/json-knowledge-graph’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Apr 23, 2026
  • ubkg-jkg-generation Public

    The generation framework for the Unified Biomedical Knowledge Graph-JSON Knowledge Graph format (UBKG-JKG)

    x-atlas-consortia/ubkg-jkg-generation’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Apr 23, 2026
  • data-submission-guide Public

    A documentation site for the Data Submission Guide used by both HuBMAP and SenNet

    x-atlas-consortia/data-submission-guide’s past year of commit activity
    1 0 3 0 Updated Apr 22, 2026
  • portal-visualization Public

    Given HuBMAP Dataset JSON, creates a Vitessce configuration

    x-atlas-consortia/portal-visualization’s past year of commit activity
    Python 1 MIT 1 13 0 Updated Apr 21, 2026
  • avr-ui Public

    Antibody Validation Report UI

    x-atlas-consortia/avr-ui’s past year of commit activity
    Python 0 0 3 0 Updated Apr 21, 2026
  • uuid-api Public

    A restful web service used to create and query UUIDs used across HuBMAP and SenNet

    x-atlas-consortia/uuid-api’s past year of commit activity
    Python 2 MIT 0 5 0 Updated Apr 16, 2026
  • commons Public

    The common code supporting the web services in the consortia

    x-atlas-consortia/commons’s past year of commit activity
    Python 0 0 1 1 Updated Apr 16, 2026
  • ubkg-jkg-umls Public

    UBKG-JKG-UMLS: tools to convert UMLS data to JSON Knowledge Graph (JKG) format

    x-atlas-consortia/ubkg-jkg-umls’s past year of commit activity
    Jupyter Notebook 0 MIT 0 1 0 Updated Apr 16, 2026
  • hra-api Public

    HRA-API: Human Reference Atlas API

    x-atlas-consortia/hra-api’s past year of commit activity
    Jupyter Notebook 0 MIT 0 11 0 Updated Apr 14, 2026
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