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1. Epi-Flow Epi-Flow Public

   A unified, end-centric pipeline for processing chromatin accessibility and occupancy assays—from ATAC-seq to CUT&RUN, ChIP-seq, and beyond.

   Python

2. ComplexMap ComplexMap Public

   A Toolset for the Functional Analysis and Visualization of Protein Complex Data

   JavaScript

3. SingleCellFeatureProfiler SingleCellFeatureProfiler Public

   A powerful, multi-interface Python package for deep characterization of gene expression patterns from single-cell data

   Python

4. ShinyCITExpresso ShinyCITExpresso Public

   A ShinyApp for visualization and explorering Cellular Indexing of Transcriptomes and Epitopes by Sequencing (CITE-seq) data

   R 1

5. SMAD SMAD Public

   Latest update of Bioconductor package SMAD

   C 1

6. SMED SMED Public

   Statistical Modelling of co-Elution Data to infer protein-protein interactions

   R