v2.11.0

• fix:
  • predictLocalization and parseScores to correctly handle output from CELLO
  • setParam report reactions not found in model
  • mergeModels will only make new metFrom, rxnForm and geneFrom fields if none of the initial models have these fields
  • handling of subSystems in various functions, RAVEN supports both cell arrays and nested cell arrays
  • YAML file I/O for models without genes
  • runINIT retains params as flag for optimizeProb input
  • copyToComps does not add or modify metFrom, rxnForm or geneFrom fields
  • addRxns makes sure that subSystems are nested cell arrays
  • fitTasks parses correct arguments to fillGaps
• refactor:
  • exportModel speed-up subSystems handling
• chore:
  • updated BLAST+, DIAMOND, MAFFT and HMMER binaries
  • update KEGG to release 116.0, retrained HMMs
• feat:
  • runRAVENtests runs RAVEN unit tests
  • findRAVENroot stores RAVEN root as MATLAB preference during checkInstallation, to avoid problems when running on HPC clusters
• doc:
  • parseTaskList clarifies that it can handle both *.txt and *.xlsx as input