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1. pyensembl pyensembl Public

   Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl

   Python 400 72

2. varcode varcode Public

   Library for manipulating genomic variants and predicting their effects

   Python 86 26

3. mhcflurry mhcflurry Public

   Peptide-MHC I binding affinity prediction

   Python 242 74

4. vaxrank vaxrank Public

   Ranked vaccine peptides for personalized cancer immunotherapy

   Python 61 25

5. mhctools mhctools Public

   Python interface to running command-line and web-based MHC binding predictors

   Python 101 25

6. neoantigen-vaccine-pipeline neoantigen-vaccine-pipeline Public

   Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines

   Python 90 28