Repositories list

• upptime

  Public
  CNS Services Uptime Monitor

  Markdown

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 25, 2026Apr 25, 2026

• cns-webxr-solar

  Public
  A test project for using WebXR with the Babylon.js Editor and Angular

  JavaScript

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 24, 2026Apr 24, 2026

• cns-website

  Public
  The new CNS website

  JavaScript

  •00 forks•00 stars•2626 issues•00 pull requests•Updated Apr 24, 2026Apr 24, 2026

• AtlasNG

  Public
  The AtlasNG application framework is a suite of modular UI components, utilities, and an underlying Material design-based design system optimized to work togeth…

  TypeScript

  •

  MIT License

  •00 forks•11 star•00 issues•11 pull request•Updated Apr 24, 2026Apr 24, 2026

• hra-pop-notebooks

  Public
  A repo for code to visualize HRApop data for analysis and validation

  Jupyter Notebook

  •11 fork•00 stars•11 issue•00 pull requests•Updated Apr 23, 2026Apr 23, 2026

• hra-ftu-explorer-supporting-information

  Public
  Supporting information page for the FTU Explorer paper (in progress)

  human-reference-atlassupporting-information

  human-reference-atlassupporting-information

  Jupyter Notebook

  •00 forks•00 stars•11 issue•00 pull requests•Updated Apr 21, 2026Apr 21, 2026

• hra-sennet-hoa-kaggle-2024

  Public
  Code for "Vasculature segmentation in 3D hierarchical phase-contrast tomography images of human kidneys"

  machine-learningcomputer-visiondeep-learning+ 3

  machine-learningcomputer-visiondeep-learningkaggle-competitionpublication-codevasculature

  Jupyter Notebook

  •

  MIT License

  •11 fork•11 star•11 issue•00 pull requests•Updated Apr 21, 2026Apr 21, 2026

• hra-organ-gallery-supporting-information

  Public
  Supporting Information for "Virtual Reality Enables Multiscale Exploration of the Human Reference Atlas"

  human-reference-atlassupporting-information

  human-reference-atlassupporting-information

  00 forks•00 stars•00 issues•00 pull requests•Updated Apr 21, 2026Apr 21, 2026

• hra-literature

  Public
  HRAlit v0.5

  human-reference-atlas

  human-reference-atlas

  Python

  •

  MIT License

  •00 forks•55 stars•00 issues•00 pull requests•Updated Apr 20, 2026Apr 20, 2026

• hra-a5-scoops

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 16, 2026Apr 16, 2026

• hra-amap

  Public
  HRA-AMAP: Bidirectional Projections Between Human Atlas Systems for Data and Code Interoperability

  human-reference-atlas

  human-reference-atlas

  Jupyter Notebook

  •

  MIT License

  •22 forks•22 stars•66 issues•00 pull requests•Updated Apr 15, 2026Apr 15, 2026

• hra-vccf-cell-distance-visualizations

  Public
  HRA VCCF cell distance visualizations extended to other organs, based on work on skin data.

  human-reference-atlas

  human-reference-atlas

  HTML

  •

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Apr 9, 2026Apr 9, 2026

• hra-multiftu-segmentation-pipeline

  Public
  Segmentation pipeline for multiple Functional Tissue Units (FTUs) based on code from the Kaggle #2 Competition.

  human-reference-atlas

  human-reference-atlas

  Python

  •

  MIT License

  •00 forks•11 star•22 issues•00 pull requests•Updated Apr 6, 2026Apr 6, 2026

• ccf-research-kaggle-2022

  Public
  Supporting information page for the "Segmenting functional tissue units across human organs using community-driven development of generalizable machine learning…

  pythonmachine-learningkaggle+ 1

  pythonmachine-learningkagglehuman-reference-atlas

  Python

  •

  MIT License

  •22 forks•00 stars•00 issues•00 pull requests•Updated Apr 6, 2026Apr 6, 2026

• ccf-research-kaggle-2021

  Public
  Supporting information page for the "Robust and generalizable segmentation of human functional tissue units" paper

  human-reference-atlas

  human-reference-atlas

  HTML

  •

  MIT License

  •33 forks•1010 stars•00 issues•00 pull requests•Updated Apr 6, 2026Apr 6, 2026

• hra-cell-distance-analysis

  Public
  Cell Distance Analysis for Spatial Omics Datasets, primarily focused on vascular cells.

  Jupyter Notebook

  •

  MIT License

  •00 forks•22 stars•00 issues•00 pull requests•Updated Apr 6, 2026Apr 6, 2026

• cns-nrt-evaluation-supporting-information

  Public
  Supporting information and data for the 2024 evaluation of the Complex Networks & Systems NSF Research Trainneeship (CNS NRT) program.

  TeX

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 6, 2026Apr 6, 2026

• scimaps

  Public
  SciMaps website

  TypeScript

  •00 forks•33 stars•2323 issues•00 pull requests•Updated Mar 31, 2026Mar 31, 2026

• ldsparql

  Public
  Query Linked Data with SPARQL

  JavaScript

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 31, 2026Mar 31, 2026

• dvl-llm

  Public
  Data Visualization Literacy Framework + LLMs

  Jupyter Notebook

  •11 fork•00 stars•33 issues•00 pull requests•Updated Mar 30, 2026Mar 30, 2026

• hra-kg-supporting-information

  Public
  Supporting Information for “Construction, Deployment, and Usage of the Human Reference Atlas Knowledge Graph for Linked Open Data”

  Jupyter Notebook

  •00 forks•11 star•22 issues•00 pull requests•Updated Mar 27, 2026Mar 27, 2026

• hra-cell-type-populations-supporting-information

  Public
  Supporting information page for the HRApop paper

  human-reference-atlassupporting-information

  human-reference-atlassupporting-information

  Jupyter Notebook

  •11 fork•00 stars•00 issues•00 pull requests•Updated Mar 27, 2026Mar 27, 2026

• data-vis-xr-panel-2025

  Public
  Panel website for the IEEE VIS 2025 panel entitled "TALK, TRY, TELL: Challenges and Opportunities for Theory-Grounded Data Visualization in Extended Reality"

  MAXScript

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 13, 2026Mar 13, 2026

• hra-cfde-marker-visualizations

  Public
  Visualizations for the CFDE Marker Paper 2026

  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 23, 2026Feb 23, 2026

• ctann-data-descriptor-supporting-information

  Public
  Supporting Information for "Constructing, Validating, and Using Human Reference Atlas Crosswalks"

  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 23, 2026Feb 23, 2026

• coi-supporting-information

  Public
  Supporting information page for 'Mapping the Hidden Backbone of Industry-Academia: A Longitudinal Network Analysis of Conflict of Interest Statements in the Hum…

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 19, 2026Feb 19, 2026

• hra-ftu-rag-supporting-information

  Public
  Supporting information page for "AI-Driven Functional Tissue Unit Characteristics Discovery for the Human Reference Atlas"

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 16, 2026Feb 16, 2026

• hra-deepcell-experiments

  Public
  Using Deepcell and Deepcelltypes for cell segmentation and annotation of relevant single-cell multiplexed imaging datasets.

  Jupyter Notebook

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 12, 2026Feb 12, 2026

• hra-enter-vr

  Public
  TypeScript

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 10, 2026Feb 10, 2026

• issi-vr-workshop-2023

  Public
  A GitHub repository to hold the code for ISSI 2023 workshop on network visualization in VR

  C#

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 9, 2026Feb 9, 2026