docs: fix broken intersphinx links#442
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Add napoleon_type_aliases to map short-form type names (ndarray, pd.DataFrame, pd.Series, etc.) used in docstrings to their fully qualified intersphinx targets. Remove the now-unnecessary pandas/numpy entries from nitpick_ignore since intersphinx can resolve them properly. Add anndata._core.anndata.AnnData to nitpick_ignore as autodoc resolves the runtime module path for base-class references which intersphinx cannot remap. Closes scverse#437 Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
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autodoc resolves pd.DataFrame type annotations to the internal module path pandas.core.frame.DataFrame, which is not in the pandas intersphinx inventory (only pandas.DataFrame is). Add to nitpick_ignore. Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
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Thanks for the review @grst! pandas.core.frame.DataFrame warnings -- Fixed in 77987f4. The issue is that CI failure (Python 3.11) -- The "Compile docs" step is the only thing failing, and it's the same step that's been failing on |
Summary
napoleon_type_aliasesfor short-form types (ndarray,pd.DataFrame,pd.Series,np.ndarray,pandas.Index) so Napoleon maps them to fully qualified intersphinx targetspd.Series,pd.DataFrame,pandas.core.frame.DataFrame, andndarrayfromnitpick_ignoresince intersphinx now resolves them correctlyanndata._core.anndata.AnnDatatonitpick_ignore(autodoc resolves the runtime module path for base-class references, which intersphinx cannot remap)Closes #437
Test plan
make htmlindocs/builds with zero warnings🤖 Generated with Claude Code