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tools_bam_readcount.cwl
Travis CI User edited this page Feb 4, 2020
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This page is auto-generated. Do not edit.
run bam-readcount
mgibio/bam_readcount_helper-cwl:1.1.1
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| vcf | File | |||
| sample | string | |||
| reference_fasta | ['string', 'File'] | ['.fai', '^.dict'] | ||
| bam | File | ['.bai'] | ||
| prefix | string? | |||
| min_base_quality | int? | |||
| min_mapping_quality | int? |
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| snv_bam_readcount_tsv | File | |||
| indel_bam_readcount_tsv | File |