tools_star_fusion_detect.cwl

Documentation for star_fusion_detect.cwl

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Overview

STAR-Fusion identify candidate fusion transcript

Docker Requirement

trinityctat/starfusion:1.10.1

Inputs

Name	Label	Description	Type	Secondary Files
star_fusion_genome_dir		fusion genome dir directory containing genome lib (see http://STAR-Fusion.github.io)	['string', 'Directory']
junction_file			File
fusion_output_dir			string
star_path			string
examine_coding_effect			boolean?
fusioninspector_mode			['null', {'type': 'enum', 'symbols': ['inspect', 'validate']}]
fastq			File[]
fastq2			File[]

Outputs

Name	Label	Description	Type	Secondary Files
fusion_predictions			File
fusion_abridged			File
coding_region_effects			File?
fusioninspector_evidence			File[]?